PROMO: detection of known transcription regulatory elements using species-tailored searches
X Messeguer, R Escudero, D Farré, O Nuñez… - …, 2002 - academic.oup.com
X Messeguer, R Escudero, D Farré, O Nuñez, J Martı́nez, MM Albà
Bioinformatics, 2002•academic.oup.comWe have developed a set of tools to construct positional weight matrices from known
transcription factor binding sites in a species or taxon-specific manner, and to search for
matches in DNA sequences. Availability: PROMO can be accessed online at http://www. lsi.
upc. es/~ alggen under the research link. Supplementary information: An example of the
graphic interface (Figure 1) can be visualized at http://www. lsi. upc. es/~
alggen/recerca/promo/figuraBioinformatics. html. Contact: peypoch@ lsi. upc. es; m. alba …
transcription factor binding sites in a species or taxon-specific manner, and to search for
matches in DNA sequences. Availability: PROMO can be accessed online at http://www. lsi.
upc. es/~ alggen under the research link. Supplementary information: An example of the
graphic interface (Figure 1) can be visualized at http://www. lsi. upc. es/~
alggen/recerca/promo/figuraBioinformatics. html. Contact: peypoch@ lsi. upc. es; m. alba …
Abstract
Summary: We have developed a set of tools to construct positional weight matrices from known transcription factor binding sites in a species or taxon-specific manner, and to search for matches in DNA sequences.
Availability: PROMO can be accessed online at http://www.lsi.upc.es/~alggen under the research link.
Supplementary information: An example of the graphic interface (Figure 1) can be visualized at http://www.lsi.upc.es/~alggen/recerca/promo/figuraBioinformatics.html.
Contact: peypoch@lsi.upc.es; m.alba@ucl.ac.uk
Oxford University Press