The anisotropic network model web server at 2015 (ANM 2.0)
The anisotropic network model (ANM) is one of the simplest yet powerful tools for exploring
protein dynamics. Its main utility is to predict and visualize the collective motions of large
complexes and assemblies near their equilibrium structures. The ANM server, introduced by
us in 2006 helped making this tool more accessible to non-sophisticated users. We now
provide a new version (ANM 2.0), which allows inclusion of nucleic acids and ligands in the
network model and thus enables the investigation of the collective motions of protein …
protein dynamics. Its main utility is to predict and visualize the collective motions of large
complexes and assemblies near their equilibrium structures. The ANM server, introduced by
us in 2006 helped making this tool more accessible to non-sophisticated users. We now
provide a new version (ANM 2.0), which allows inclusion of nucleic acids and ligands in the
network model and thus enables the investigation of the collective motions of protein …
Abstract
Summary: The anisotropic network model (ANM) is one of the simplest yet powerful tools for exploring protein dynamics. Its main utility is to predict and visualize the collective motions of large complexes and assemblies near their equilibrium structures. The ANM server, introduced by us in 2006 helped making this tool more accessible to non-sophisticated users. We now provide a new version (ANM 2.0), which allows inclusion of nucleic acids and ligands in the network model and thus enables the investigation of the collective motions of protein–DNA/RNA and –ligand systems. The new version offers the flexibility of defining the system nodes and the interaction types and cutoffs. It also includes extensive improvements in hardware, software and graphical interfaces.
Availability and implementation: ANM 2.0 is available at http://anm.csb.pitt.edu
Contact: eran.eyal@sheba.health.gov.il, eyal.eran@gmail.com
Oxford University Press