Evol and ProDy for bridging protein sequence evolution and structural dynamics
Bioinformatics, 2014•academic.oup.com
Correlations between sequence evolution and structural dynamics are of utmost importance
in understanding the molecular mechanisms of function and their evolution. We have
integrated Evol, a new package for fast and efficient comparative analysis of evolutionary
patterns and conformational dynamics, into ProDy, a computational toolbox designed for
inferring pro tein dyn amics from experimental and theoretical data. Using information-
theoretic approaches, Evol coanalyzes conservation and coevolution profiles extracted from …
in understanding the molecular mechanisms of function and their evolution. We have
integrated Evol, a new package for fast and efficient comparative analysis of evolutionary
patterns and conformational dynamics, into ProDy, a computational toolbox designed for
inferring pro tein dyn amics from experimental and theoretical data. Using information-
theoretic approaches, Evol coanalyzes conservation and coevolution profiles extracted from …
Abstract
Correlations between sequence evolution and structural dynamics are of utmost importance in understanding the molecular mechanisms of function and their evolution. We have integrated Evol , a new package for fast and efficient comparative analysis of evolutionary patterns and conformational dynamics, into ProDy , a computational toolbox designed for inferring pro tein dyn amics from experimental and theoretical data. Using information-theoretic approaches, Evol coanalyzes conservation and coevolution profiles extracted from multiple sequence alignments of protein families with their inferred dynamics.
Availability and implementation: ProDy and Evol are open-source and freely available under MIT License fromhttp://prody.csb.pitt.edu/.
Contact: bahar@pitt.edu
Oxford University Press